Available Modules

bio

Module	Description	Versions
cutadapt	Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads.	4.2-GCCcore-11.3.0
FastQC	FastQC is a quality control application for high throughput sequence data. It reads in sequence data in a variety of formats and can either provide an interactive application to review the results of several different QC checks, or create an HTML based report which can be integrated into a pipeline.	0.11.9-Java-11
GROMACS	GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. This is a CPU only build, containing both MPI and threadMPI builds for both single and double precision. It also contains the gmxapi extension for the single precision MPI build.	2021.5-foss-2021b-CUDA-11.4.1 2021.5-foss-2021b 2023.2-foss-2021b-CUDA-11.4.1 2023.2-intelmkl-CUDA-12.0
HISAT2	HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) against the general human population (as well as against a single reference genome).	2.2.1-gompi-2022a
HTSeq	HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.	2.0.2-foss-2022a
HTSlib	A C library for reading/writing high-throughput sequencing data. This package includes the utilities bgzip and tabix	1.15.1-GCC-11.3.0
MultiQC	Aggregate results from bioinformatics analyses across many samples into a single report. MultiQC searches a given directory for analysis logs and compiles an HTML report. It's a general use tool, perfect for summarising the output from numerous bioinformatics tools.	1.14-foss-2022a
ncbi-vdb	The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives.	3.0.2-gompi-2022a
picard	A set of tools (in Java) for working with next generation sequencing data in the BAM format.	3.0.0-Java-17
Pysam	Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.	0.16.0.1-GCC-9.3.0 0.19.1-GCC-11.3.0
SAMtools	SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.	1.16.1-GCC-11.3.0
SRA-Toolkit	The SRA Toolkit, and the source-code SRA System Development Kit (SDK), will allow you to programmatically access data housed within SRA and convert it from the SRA format	3.0.3-gompi-2022a
STAR	STAR aligns RNA-seq reads to a reference genome using uncompressed suffix arrays.	2.7.10b-GCC-11.3.0
Subread	High performance read alignment, quantification and mutation discovery	2.0.4-GCC-11.3.0
Trimmomatic	Trimmomatic performs a variety of useful trimming tasks for illumina paired-end and single ended data.The selection of trimming steps and their associated parameters are supplied on the command line.	0.39-Java-17
UMI-tools	Tools for handling Unique Molecular Identifiers in NGS data sets	1.0.1-foss-2020a-Python-3.8.2

cae

Module	Description	Versions
FDS	Fire Dynamics Simulator (FDS) is a computational fluid dynamics (CFD) model of fire-driven fluid flow. The software solves numerically a form of the Navier-Stokes equations appropriate for low-speed, thermally-driven flow, with an emphasis on smoke and heat transport from fires.	6.5.2-intel 6.5.2-openmpi-gcc
OpenFOAM	OpenFOAM is a free, open source CFD software package. OpenFOAM has an extensive range of features to solve anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics and electromagnetics.	v2206-foss-2022a

chem

Module	Description	Versions
atat	ATAT is a generic name that refers to a collection of alloy theory tools developped by Axel van de Walle, in collaboration with various research groups and with various sources of financial support.	3.36
cfour	CFOUR (Coupled-Cluster techniques for Computational Chemistry) is a program package for performing high-level quantum chemical calculations on atoms and molecules. The major strength of the program suite is its rather sophisticated arsenal of high-level ab initio methods for the calculation of atomic and molecular properties. Virtually all approaches based on Møller-Plesset (MP) perturbation theory and the coupled-cluster approximation (CC) are available; most of these have complementary analytic derivative approaches within the package as well.	OpenMPI-4.1.1-intel-mkl
CP2K	CP2K is a freely available (GPL) program, written in Fortran 95, to perform atomistic and molecular simulations of solid state, liquid, molecular and biological systems. It provides a general framework for different methods such as e.g. density functional theory (DFT) using a mixed Gaussian and plane waves approach (GPW), and classical pair and many-body potentials.	2022.1-foss-2022a 2023.1-foss-2022b
dftd4	The dftd4 project provides an implementation of the generally applicable, charge dependent London-dispersion correction, termed DFT-D4.	3.6.0_intel2022b
DIRAC	DIRAC: Program for Atomic and Molecular Direct Iterative Relativistic All-electron Calculations	22.0-foss-2021a
GAMESS-US	The General Atomic and Molecular Electronic Structure System (GAMESS) is a general ab initio quantum chemistry package.	2022-R2-intel-2022a
kim-api	Open Knowledgebase of Interatomic Models. KIM is an API and OpenKIM is a collection of interatomic models (potentials) for atomistic simulations. This is a library that can be used by simulation programs to get access to the models in the OpenKIM database. This EasyBuild only installs the API, the models can be installed with the package openkim-models, or the user can install them manually by running kim-api-collections-management install user MODELNAME or kim-api-collections-management install user OpenKIM to install them all.	2.2.1-GCCcore-10.3.0 2.3.0-GCCcore-11.2.0
LAMMPS	LAMMPS is a classical molecular dynamics code, and an acronym for Large-scale Atomic/Molecular Massively Parallel Simulator. LAMMPS has potentials for solid-state materials (metals, semiconductors) and soft matter (biomolecules, polymers) and coarse-grained or mesoscopic systems. It can be used to model atoms or, more generically, as a parallel particle simulator at the atomic, meso, or continuum scale. LAMMPS runs on single processors or in parallel using message-passing techniques and a spatial-decomposition of the simulation domain. The code is designed to be easy to modify or extend with new functionality.	23Jun2022-foss-2021a-kokkos 23Jun2022-foss-2021a-kokkos_MB 23Jun2022-foss-2021b-kokkos-CUDA-11.4.1
Libint	Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.	2.7.2-GCC-11.3.0-lmax-6-cp2k 2.7.2-GCC-12.2.0-lmax-6-cp2k
libxc	Libxc is a library of exchange-correlation functionals for density-functional theory. The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.	5.2.3-GCC-11.3.0 5.2.3-intel-compilers-2022.1.0 6.1.0-GCC-12.2.0
molden	Molden is a package for displaying Molecular Density from the Ab Initio packages GAMESS-UK , GAMESS-US and GAUSSIAN and the Semi-Empirical packages Mopac/Ampac, it also supports a number of other programs via the Molden Format.	7.3
molpro	Molpro is a comprehensive system of ab initio programs for advanced molecular electronic structure calculations, designed and maintained by H.-J. Werner and P. J. Knowles, and containing contributions from many other authors. It comprises efficient and well parallelized programs for standard computational chemistry applications, such as DFT with a large choice of functionals, as well as state-of-the art high-level coupled-cluster and multi-reference wave function methods. Electronically excited states can be treated using MCSCF/CASSCF, CASPT2, MRCI, or FCI methods, or by response methods such as TDDFT, CC2, and EOM-CCSD. There are many modules for computing molecular properties, geometry optimization, calculation of harmonic and anharmonic vibrational frequencies, and further wave function analysis. Analytical energy gradients are available for DFT, HF, MP2, MP2-F12, CCSD, CCSD-F12, DCSD, QCISD, QCISD(T), CASSCF, and CASPT2. Density fitting (DF or RI) approximations can speed up DFT and MP2 calculations with large basis sets by orders of magnitude, and explicitly correlated methods [MP2-F12, CCSD(T)-F12, CASPT2-F12, MRCI-F12] minimize basis set incompleteness errors to yield near CBS quality results with triple-zeta basis sets. Combined with local approximations and efficient parallelizations, high-level methods [PNO-LMP2-F12, PNO-LCCSD(T)-F12] can be be applied to large molecules of chemical interest, yielding unprecedented accuracy (for a recent review see WIREs Comput Mol Sci. 2018, e1371). Furthermore, WF-in-DFT embedding or QM/MM methods can be used to extend the applicability of ab initio methods to large systems of chemical or biochemical interest. The following two reviews summarise with examples the capabilities of the package.	2023.2.0
NAMD	NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems.	2.14-foss-2021a-CUDA-11.3.1
NewtonX	NX is a general-purpose program package for simulating the dynamics of electronically excited molecules and molecular assemblies. It is a platform for performing all simulation steps, from generating the initial conditions to the statistical analysis of the results.	2.4-B06
NWChem	NWChem aims to provide its users with computational chemistry tools that are scalable both in their ability to treat large scientific computational chemistry problems efficiently, and in their use of available parallel computing resources from high-performance parallel supercomputers to conventional workstation clusters. NWChem software can handle: biomolecules, nanostructures, and solid-state; from quantum to classical, and all combinations; Gaussian basis functions or plane-waves; scaling from one to thousands of processors; properties and relativity.	7.0.2-intel-2022a
OpenMolcas	OpenMolcas is a quantum chemistry software package.	22.10-intel-2022a
ORCA	ORCA is an ab initio quantum chemistry program package that contains modern electronic structure methods including density functional theory, many-body perturbation, coupled cluster, multireference methods, and semi-empirical quantum chemistry methods. Its main field of application is larger molecules, transition metal complexes, and their spectroscopic properties. ORCA is developed in the research group of Frank Neese. The free version is available only for academic use at academic institutions	5.0.4-OpenMPI-4.1.4
PLUMED	PLUMED is an open source library for free energy calculations in molecular systems which works together with some of the most popular molecular dynamics engines. Free energy calculations can be performed as a function of many order parameters with a particular focus on biological problems, using state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD. The software, written in C++, can be easily interfaced with both fortran and C/C++ codes.	2.7.2-foss-2021a 2.7.3-foss-2021b 2.8.0-foss-2021b 2.8.1-foss-2022a 2.8.2_MB-foss-2021a 2.9.0-foss-2022b
qchem	Q-Chem is an ab initio quantum chemistry software package for fast and accurate simulations of molecular systems, including electronic and molecular structure, reactivities, properties, and structure.	6.1
QuantumESPRESSO	Quantum ESPRESSO is an integrated suite of computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials (both norm-conserving and ultrasoft).	7.1-intel-2022a 7.2-intel-2022a 7.2-nvhpc
ReSpect	ReSpect is a computer simulation program enabling the prediction and understanding of molecular and material properties from advanced first-principle relativistic DFT calculations.	5.2.0
Wannier90	A tool for obtaining maximally-localised Wannier functions	3.1.0-foss-2022a 3.1.0-intel-2022a

compiler

Module	Description	Versions
Clang	C, C++, Objective-C compiler, based on LLVM. Does not include C++ standard library -- use libstdc++ from GCC.	16.0.4-GCCcore-12.2.0-CUDA-11.8.0 16.0.4-GCCcore-12.2.0
GCC	The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).	10.2.0 10.3.0 11.2.0 11.3.0 12.2.0 5.4.0-2.26 8.3.0 9.3.0
GCCcore	The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).	10.2.0 10.3.0 11.2.0 11.3.0 12.2.0 12.3.0 5.4.0 8.3.0 9.3.0
Go	Go is an open source programming language that makes it easy to build simple, reliable, and efficient software.	1.18.3
intel-compilers	Intel C, C++ & Fortran compilers (classic and oneAPI)	2021.2.0 2021.4.0 2022.1.0 2022.2.1 2023.1.0
LLVM	The LLVM Core libraries provide a modern source- and target-independent optimizer, along with code generation support for many popular CPUs (as well as some less common ones!) These libraries are built around a well specified code representation known as the LLVM intermediate representation ("LLVM IR"). The LLVM Core libraries are well documented, and it is particularly easy to invent your own language (or port an existing compiler) to use LLVM as an optimizer and code generator.	11.0.0-GCCcore-10.2.0 12.0.1-GCCcore-11.2.0 14.0.3-GCCcore-11.3.0 16.0.6-GCCcore-12.3.0
NVHPC	C, C++ and Fortran compilers included with the NVIDIA HPC SDK (previously: PGI)	22.7-CUDA-11.7.0

data

Module	Description	Versions
BeautifulSoup	Beautiful Soup is a Python library designed for quick turnaround projects like screen-scraping.	4.10.0-GCCcore-11.3.0
Fiona	Fiona is designed to be simple and dependable. It focuses on reading and writing data in standard Python IO style and relies upon familiar Python types and protocols such as files, dictionaries, mappings, and iterators instead of classes specific to OGR. Fiona can read and write real-world data using multi-layered GIS formats and zipped virtual file systems and integrates readily with other Python GIS packages such as pyproj, Rtree, and Shapely.	1.8.21-foss-2021b
GDAL	GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for data translation and processing.	3.3.2-foss-2021b 3.5.0-foss-2022a
HDF	HDF (also known as HDF4) is a library and multi-object file format for storing and managing data between machines.	4.2.15-GCCcore-11.2.0 4.2.15-GCCcore-11.3.0
HDF5	HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data.	1.10.7-gompi-2020b 1.10.7-gompi-2021a 1.10.7-iompi-2021a 1.12.1-gompi-2021b 1.12.2-gompi-2022a 1.12.2-iimpi-2022a
Jansson	Jansson is a C library for encoding, decoding and manipulating JSON data. Its main features and design principles are: * Simple and intuitive API and data model * Comprehensive documentation * No dependencies on other libraries * Full Unicode support (UTF-8) * Extensive test suite	2.13.1-GCC-11.2.0 2.14-GCC-11.3.0
LAME	LAME is a high quality MPEG Audio Layer III (MP3) encoder licensed under the LGPL.	3.100-GCCcore-10.3.0 3.100-GCCcore-11.2.0 3.100-GCCcore-11.3.0
netCDF	NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.	4.7.4-gompi-2020b 4.8.0-gompi-2021a 4.8.1-gompi-2021b 4.9.0-gompi-2022a
netCDF-C++4	NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.	4.3.1-gompi-2022a
netCDF-Fortran	NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.	4.6.0-gompi-2022a
PostgreSQL	PostgreSQL is a powerful, open source object-relational database system. It is fully ACID compliant, has full support for foreign keys, joins, views, triggers, and stored procedures (in multiple languages). It includes most SQL:2008 data types, including INTEGER, NUMERIC, BOOLEAN, CHAR, VARCHAR, DATE, INTERVAL, and TIMESTAMP. It also supports storage of binary large objects, including pictures, sounds, or video. It has native programming interfaces for C/C++, Java, .Net, Perl, Python, Ruby, Tcl, ODBC, among others, and exceptional documentation.	13.4-GCCcore-11.2.0 14.4-GCCcore-11.3.0
pugixml	pugixml is a light-weight C++ XML processing library	1.12.1-GCCcore-11.2.0

devel

Module	Description	Versions
ant	Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other. The main known usage of Ant is the build of Java applications.	1.10.11-Java-11
Autoconf	Autoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating system features that the package can use, in the form of M4 macro calls.	2.69-GCCcore-10.2.0 2.69-GCCcore-9.3.0 2.71-GCCcore-10.3.0 2.71-GCCcore-11.2.0 2.71-GCCcore-11.3.0 2.71-GCCcore-12.2.0 2.71-GCCcore-12.3.0
Automake	Automake: GNU Standards-compliant Makefile generator	1.16.1-GCCcore-9.3.0 1.16.2-GCCcore-10.2.0 1.16.3-GCCcore-10.3.0 1.16.4-GCCcore-11.2.0 1.16.5-GCCcore-11.3.0 1.16.5-GCCcore-12.2.0 1.16.5-GCCcore-12.3.0
Autotools	This bundle collect the standard GNU build tools: Autoconf, Automake and libtool	20180311-GCCcore-9.3.0 20200321-GCCcore-10.2.0 20210128-GCCcore-10.3.0 20210726-GCCcore-11.2.0 20220317-GCCcore-11.3.0 20220317-GCCcore-12.2.0 20220317-GCCcore-12.3.0
Boost	Boost provides free peer-reviewed portable C++ source libraries.	1.76.0-GCC-10.3.0 1.77.0-GCC-11.2.0 1.79.0-GCC-11.2.0 1.79.0-GCC-11.3.0 1.81.0-GCC-12.2.0
CMake	CMake, the cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software.	3.16.4-GCCcore-9.3.0 3.18.4-GCCcore-10.2.0 3.20.1-GCCcore-10.3.0 3.21.1-GCCcore-11.2.0 3.22.1-GCCcore-11.2.0 3.23.1-GCCcore-11.3.0 3.24.3-GCCcore-12.2.0 3.26.3-GCCcore-12.3.0
DBus	D-Bus is a message bus system, a simple way for applications to talk to one another. In addition to interprocess communication, D-Bus helps coordinate process lifecycle; it makes it simple and reliable to code a "single instance" application or daemon, and to launch applications and daemons on demand when their services are needed.	1.13.18-GCCcore-10.2.0 1.13.18-GCCcore-11.2.0 1.14.0-GCCcore-11.3.0
dbus-glib	D-Bus is a message bus system, a simple way for applications to talk to one another.	0.112-GCCcore-11.2.0
Doxygen	Doxygen is a documentation system for C++, C, Java, Objective-C, Python, IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D.	1.8.17-GCCcore-9.3.0 1.8.20-GCCcore-10.2.0 1.9.1-GCCcore-10.3.0 1.9.1-GCCcore-11.2.0 1.9.4-GCCcore-11.3.0
GConf	GConf is a system for storing application preferences. It is intended for user preferences; not configuration of something like Apache, or arbitrary data storage.	3.2.6-GCCcore-11.2.0
glew	The OpenGL Extension Wrangler Library (GLEW) is a cross-platform open-source C/C++ extension loading library. GLEW provides efficient run-time mechanisms for determining which OpenGL extensions are supported on the target platform.	2.1.0-GCCcore-10.2.0 2.2.0-GCCcore-11.2.0-egl
GObject-Introspection	GObject introspection is a middleware layer between C libraries (using GObject) and language bindings. The C library can be scanned at compile time and generate a metadata file, in addition to the actual native C library. Then at runtime, language bindings can read this metadata and automatically provide bindings to call into the C library.	1.68.0-GCCcore-11.2.0 1.72.0-GCCcore-11.3.0
gperf	GNU gperf is a perfect hash function generator. For a given list of strings, it produces a hash function and hash table, in form of C or C++ code, for looking up a value depending on the input string. The hash function is perfect, which means that the hash table has no collisions, and the hash table lookup needs a single string comparison only.	3.1-GCCcore-10.2.0 3.1-GCCcore-10.3.0 3.1-GCCcore-11.2.0 3.1-GCCcore-11.3.0 3.1-GCCcore-9.3.0
intltool	intltool is a set of tools to centralize translation of many different file formats using GNU gettext-compatible PO files.	0.51.0-GCCcore-10.2.0 0.51.0-GCCcore-10.3.0 0.51.0-GCCcore-11.2.0 0.51.0-GCCcore-11.3.0 0.51.0-GCCcore-9.3.0
libgit2	libgit2 is a portable, pure C implementation of the Git core methods provided as a re-entrant linkable library with a solid API, allowing you to write native speed custom Git applications in any language which supports C bindings.	1.4.3-GCCcore-11.3.0
M4	GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.	1.4.17-GCCcore-5.4.0 1.4.17 1.4.18-GCCcore-10.2.0 1.4.18-GCCcore-10.3.0 1.4.18-GCCcore-8.3.0 1.4.18-GCCcore-9.3.0 1.4.18 1.4.19-GCCcore-11.2.0 1.4.19-GCCcore-11.3.0 1.4.19-GCCcore-12.2.0 1.4.19-GCCcore-12.3.0 1.4.19
make	GNU version of make utility	4.3-GCCcore-10.2.0 4.3-GCCcore-11.2.0 4.3-GCCcore-9.3.0
makedepend	The makedepend package contains a C-preprocessor like utility to determine build-time dependencies.	1.0.7-GCCcore-11.3.0
makeinfo	makeinfo is part of the Texinfo project, the official documentation format of the GNU project. This is a minimal build with very basic functionality. Should only be used for build dependencies.	6.7-GCCcore-10.2.0-minimal 6.7-GCCcore-10.3.0-minimal 6.7-GCCcore-9.3.0-minimal
Mako	A super-fast templating language that borrows the best ideas from the existing templating languages	1.1.3-GCCcore-10.2.0 1.1.4-GCCcore-10.3.0 1.1.4-GCCcore-11.2.0 1.2.0-GCCcore-11.3.0
ncurses	The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.	6.1-GCCcore-8.3.0 6.1 6.2-GCCcore-10.2.0 6.2-GCCcore-10.3.0 6.2-GCCcore-11.2.0 6.2-GCCcore-9.3.0 6.2 6.3-GCCcore-11.3.0 6.3-GCCcore-12.2.0 6.3 6.4-GCCcore-12.3.0
PCRE	The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.	8.44-GCCcore-10.2.0 8.44-GCCcore-10.3.0 8.45-GCCcore-11.2.0 8.45-GCCcore-11.3.0
PCRE2	The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.	10.35-GCCcore-10.2.0 10.36-GCCcore-10.3.0 10.37-GCCcore-11.2.0 10.40-GCCcore-11.3.0
pkgconf	pkgconf is a program which helps to configure compiler and linker flags for development libraries. It is similar to pkg-config from freedesktop.org.	1.8.0-GCCcore-11.2.0 1.8.0-GCCcore-11.3.0 1.8.0 1.9.3-GCCcore-12.2.0 1.9.5-GCCcore-12.3.0
pkg-config	pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the correct compiler options on the command line so an application can use gcc -o test test.c pkg-config --libs --cflags glib-2.0 for instance, rather than hard-coding values on where to find glib (or other libraries).	0.29.2-GCCcore-10.2.0 0.29.2-GCCcore-10.3.0 0.29.2-GCCcore-11.2.0 0.29.2-GCCcore-11.3.0 0.29.2-GCCcore-8.3.0 0.29.2-GCCcore-9.3.0
protobuf	Google Protocol Buffers	3.17.3-GCCcore-11.2.0
QCA	Taking a hint from the similarly-named Java Cryptography Architecture, QCA aims to provide a straightforward and cross-platform crypto API, using Qt datatypes and conventions. QCA separates the API from the implementation, using plugins known as Providers. The advantage of this model is to allow applications to avoid linking to or explicitly depending on any particular cryptographic library. This allows one to easily change or upgrade crypto implementations without even needing to recompile the application! QCA should work everywhere Qt does, including Windows/Unix/MacOSX.	2.3.5-GCCcore-11.2.0
Qt5	Qt is a comprehensive cross-platform C++ application framework.	5.14.2-GCCcore-10.2.0 5.15.2-GCCcore-11.2.0 5.15.5-GCCcore-11.3.0
Qt5Webkit	Qt Port of WebKit. WebKit is an open source web browser engine.	5.212.0-alpha4-GCCcore-11.2.0
SQLite	SQLite: SQL Database Engine in a C Library	3.31.1-GCCcore-9.3.0 3.33.0-GCCcore-10.2.0 3.35.4-GCCcore-10.3.0 3.36-GCCcore-11.2.0 3.38.3-GCCcore-11.3.0 3.39.4-GCCcore-12.2.0 3.42.0-GCCcore-12.3.0
SWIG	SWIG is a software development tool that connects programs written in C and C++ with a variety of high-level programming languages.	4.0.2-GCCcore-10.3.0 4.0.2-GCCcore-11.3.0
xorg-macros	X.org macros utilities.	1.19.2-GCCcore-10.2.0 1.19.2-GCCcore-9.3.0 1.19.3-GCCcore-10.3.0 1.19.3-GCCcore-11.2.0 1.19.3-GCCcore-11.3.0 1.19.3-GCCcore-12.2.0 1.20.0-GCCcore-12.3.0
xproto	X protocol and ancillary headers	7.0.31-GCCcore-11.3.0
ZeroMQ	ZeroMQ looks like an embeddable networking library but acts like a concurrency framework. It gives you sockets that carry atomic messages across various transports like in-process, inter-process, TCP, and multicast. You can connect sockets N-to-N with patterns like fanout, pub-sub, task distribution, and request-reply. It's fast enough to be the fabric for clustered products. Its asynchronous I/O model gives you scalable multicore applications, built as asynchronous message-processing tasks. It has a score of language APIs and runs on most operating systems.	4.3.4-GCCcore-11.3.0

geo

Module	Description	Versions
Cartopy	Cartopy is a Python package designed to make drawing maps for data analysis and visualisation easy.	0.20.3-foss-2021b
ESMF	The Earth System Modeling Framework (ESMF) is a suite of software tools for developing high-performance, multi-component Earth science modeling applications.	8.3.0-foss-2022a
GRASS	The Geographic Resources Analysis Support System - used for geospatial data management and analysis, image processing, graphics and maps production, spatial modeling, and visualization	8.2.0-foss-2021b
maxent)	Maxent software for modeling species niches and distribtions	3.4.4

lang

Module	Description	Versions
Bison	Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.	3.0.4-GCCcore-5.4.0 3.0.4 3.3.2-GCCcore-8.3.0 3.3.2 3.5.3-GCCcore-9.3.0 3.7.1-GCCcore-10.2.0 3.7.6-GCCcore-10.3.0 3.7.6-GCCcore-11.2.0 3.8.2-GCCcore-11.3.0 3.8.2-GCCcore-12.2.0 3.8.2-GCCcore-12.3.0 3.8.2
byacc	Berkeley Yacc (byacc) is generally conceded to be the best yacc variant available. In contrast to bison, it is written to avoid dependencies upon a particular compiler.	20240109-GCCore-12.2.0 20240109-GCCore-9.3.0
CUnit	Automated testing framework for C.	2.1-3-GCCcore-11.2.0 2.1-3-GCCcore-11.3.0
flex	Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text.	2.6.0-GCCcore-5.4.0 2.6.0 2.6.4-GCCcore-10.2.0 2.6.4-GCCcore-10.3.0 2.6.4-GCCcore-11.2.0 2.6.4-GCCcore-11.3.0 2.6.4-GCCcore-12.2.0 2.6.4-GCCcore-12.3.0 2.6.4-GCCcore-8.3.0 2.6.4-GCCcore-9.3.0 2.6.4
FriBidi	The Free Implementation of the Unicode Bidirectional Algorithm.	1.0.10-GCCcore-10.3.0 1.0.10-GCCcore-11.2.0 1.0.12-GCCcore-11.3.0
Guile	Guile is a programming language, designed to help programmers create flexible applications that can be extended by users or other programmers with plug-ins, modules, or scripts.	3.0.7-GCCcore-11.2.0 3.0.8-GCCcore-11.3.0
Java	Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.	11.0.16 17.0.6
Lua	Lua is a powerful, fast, lightweight, embeddable scripting language. Lua combines simple procedural syntax with powerful data description constructs based on associative arrays and extensible semantics. Lua is dynamically typed, runs by interpreting bytecode for a register-based virtual machine, and has automatic memory management with incremental garbage collection, making it ideal for configuration, scripting, and rapid prototyping.	5.4.4-GCCcore-11.3.0
Miniconda3	Miniconda is a free minimal installer for conda. It is a small, bootstrap version of Anaconda that includes only conda, Python, the packages they depend on, and a small number of other useful packages.	23.5.2-0
NASM	NASM: General-purpose x86 assembler	2.15.05-GCCcore-10.2.0 2.15.05-GCCcore-10.3.0 2.15.05-GCCcore-11.2.0 2.15.05-GCCcore-11.3.0
nodejs	Node.js is a platform built on Chrome's JavaScript runtime for easily building fast, scalable network applications. Node.js uses an event-driven, non-blocking I/O model that makes it lightweight and efficient, perfect for data-intensive real-time applications that run across distributed devices.	16.15.1-GCCcore-11.3.0
Perl	Larry Wall's Practical Extraction and Report Language Includes a small selection of extra CPAN packages for core functionality.	5.30.2-GCCcore-9.3.0 5.30.2-GCCcore-9.3.0-minimal 5.32.0-GCCcore-10.2.0 5.32.0-GCCcore-10.2.0-minimal 5.32.1-GCCcore-10.3.0 5.32.1-GCCcore-10.3.0-minimal 5.34.0-GCCcore-11.2.0 5.34.0-GCCcore-11.2.0-minimal 5.34.1-GCCcore-11.3.0 5.34.1-GCCcore-11.3.0-minimal 5.36.0-GCCcore-12.2.0 5.36.1-GCCcore-12.3.0
Python	Python is a programming language that lets you work more quickly and integrate your systems more effectively.	2.7.18-GCCcore-10.2.0 2.7.18-GCCcore-11.2.0-bare 2.7.18-GCCcore-11.3.0-bare 2.7.18-GCCcore-9.3.0 3.10.4-GCCcore-11.3.0-bare 3.10.4-GCCcore-11.3.0 3.10.8-GCCcore-12.2.0-bare 3.10.8-GCCcore-12.2.0 3.11.3-GCCcore-12.3.0 3.8.2-GCCcore-9.3.0 3.8.6-GCCcore-10.2.0 3.9.5-GCCcore-10.3.0-bare 3.9.5-GCCcore-10.3.0 3.9.6-GCCcore-11.2.0-bare 3.9.6-GCCcore-11.2.0
R	R is a free software environment for statistical computing and graphics.	4.2.1-foss-2022a
RStudio-Server	This is the RStudio Server version. RStudio is a set of integrated tools designed to help you be more productive with R. The server can be started with: rserver --server-daemonize=0 --www-port=8787 If you need a database config one can be created with: MYTMP=mktemp -d && echo -e "provider=sqlite
directory=\({MYTMP}/sqlite" > "\)/db.conf"}/db.conf" and then used with: rserver ... --database-config-file="${MYTMP	2022.07.2+576-foss-2022a-Java-11-R-4.2.1
Ruby	Ruby is a dynamic, open source programming language with a focus on simplicity and productivity. It has an elegant syntax that is natural to read and easy to write.	3.0.1-GCCcore-11.2.0
Rust	Rust is a systems programming language that runs blazingly fast, prevents segfaults, and guarantees thread safety.	1.52.1-GCCcore-10.3.0 1.54.0-GCCcore-11.2.0 1.60.0-GCCcore-11.3.0 1.65.0-GCCcore-12.2.0
SciPy-bundle	Bundle of Python packages for scientific software	2020.03-foss-2020a-Python-3.8.2 2020.11-foss-2020b 2021.05-foss-2021a 2021.10-foss-2021b 2022.05-foss-2022a 2023.02-gfbf-2022b
SOCI	SOCI is a database access library for C++ that makes the illusion of embedding SQL queries in the regular C++ code, staying entirely within the Standard C++.	4.0.3-GCC-11.3.0
Tcl	Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.	8.6.10-GCCcore-10.2.0 8.6.10-GCCcore-9.3.0 8.6.11-GCCcore-10.3.0 8.6.11-GCCcore-11.2.0 8.6.12-GCCcore-11.3.0 8.6.12-GCCcore-12.2.0 8.6.13-GCCcore-12.3.0
Tkinter	Tkinter module, built with the Python buildsystem	3.10.4-GCCcore-11.3.0 3.8.2-GCCcore-9.3.0 3.8.6-GCCcore-10.2.0 3.9.6-GCCcore-11.2.0
Yasm	Yasm: Complete rewrite of the NASM assembler with BSD license	1.3.0-GCCcore-10.3.0 1.3.0-GCCcore-11.2.0 1.3.0-GCCcore-11.3.0

lib

Module	Description	Versions
ACTC	ACTC converts independent triangles into triangle strips or fans.	1.1-GCCcore-11.3.0
aiohttp	Asynchronous HTTP client/server framework for asyncio and Python.	3.8.3-GCCcore-11.3.0
attrdict3	AttrDict is a Python library that provides mapping objects that allow their elements to be accessed both as keys and as attributes.	2.0.2-GCCcore-11.2.0
Boost.Python	Boost.Python is a C++ library which enables seamless interoperability between C++ and the Python programming language.	1.79.0-GCC-11.3.0
Brotli	Brotli is a generic-purpose lossless compression algorithm that compresses data using a combination of a modern variant of the LZ77 algorithm, Huffman coding and 2nd order context modeling, with a compression ratio comparable to the best currently available general-purpose compression methods. It is similar in speed with deflate but offers more dense compression. The specification of the Brotli Compressed Data Format is defined in RFC 7932.	1.0.9-GCCcore-10.2.0 1.0.9-GCCcore-10.3.0 1.0.9-GCCcore-11.2.0 1.0.9-GCCcore-11.3.0
c-ares	c-ares is a C library for asynchronous DNS requests (including name resolves)	1.18.1-GCCcore-11.2.0 1.18.1-GCCcore-11.3.0
double-conversion	Efficient binary-decimal and decimal-binary conversion routines for IEEE doubles.	3.1.5-GCCcore-10.2.0 3.1.5-GCCcore-11.2.0 3.2.0-GCCcore-11.3.0
elfutils	The elfutils project provides libraries and tools for ELF files and DWARF data.	0.189-GCCcore-12.2.0
ffnvcodec	FFmpeg nvidia headers. Adds support for nvenc and nvdec. Requires Nvidia GPU and drivers to be present (picked up dynamically).	11.1.5.2
FLAC	FLAC stands for Free Lossless Audio Codec, an audio format similar to MP3, but lossless, meaning that audio is compressed in FLAC without any loss in quality.	1.3.4-GCCcore-11.3.0
FlexiBLAS	FlexiBLAS is a wrapper library that enables the exchange of the BLAS and LAPACK implementation used by a program without recompiling or relinking it.	3.0.4-GCC-10.3.0 3.0.4-GCC-11.2.0 3.2.0-GCC-11.3.0 3.2.1-GCC-12.2.0
freeglut	freeglut is a completely OpenSourced alternative to the OpenGL Utility Toolkit (GLUT) library.	3.2.1-GCCcore-11.2.0
FreeXL	FreeXL is an open source library to extract valid data from within an Excel (.xls) spreadsheet.	1.0.6-GCCcore-11.2.0
gc	The Boehm-Demers-Weiser conservative garbage collector can be used as a garbage collecting replacement for C malloc or C++ new.	8.2.0-GCCcore-11.2.0 8.2.2-GCCcore-11.3.0
GDRCopy	A low-latency GPU memory copy library based on NVIDIA GPUDirect RDMA technology.	2.3-GCCcore-11.2.0 2.3-GCCcore-11.3.0
giflib	giflib is a library for reading and writing gif images. It is API and ABI compatible with libungif which was in wide use while the LZW compression algorithm was patented.	5.2.1-GCCcore-11.2.0
glib-networking	Network extensions for GLib	2.72.1-GCCcore-11.2.0 2.72.1-GCCcore-11.3.0
GLM	OpenGL Mathematics (GLM) is a header only C++ mathematics library for graphics software based on the OpenGL Shading Language (GLSL) specifications.	0.9.9.8-GCCcore-10.2.0
GlobalArrays	Global Arrays (GA) is a Partitioned Global Address Space (PGAS) programming model	5.8.1-GCC-11.3.0 5.8.1-intel-2022a 5.8.1-intel-2022b
graphite2	Graphite is a "smart font" system developed specifically to handle the complexities of lesser-known languages of the world.	1.3.14-GCCcore-11.2.0 1.3.14-GCCcore-11.3.0
ICU	ICU is a mature, widely used set of C/C++ and Java libraries providing Unicode and Globalization support for software applications.	69.1-GCCcore-10.3.0 69.1-GCCcore-11.2.0 71.1-GCCcore-11.3.0 72.1-GCCcore-12.2.0
Imath	Imath is a C++ and python library of 2D and 3D vector, matrix, and math operations for computer graphics	3.1.5-GCCcore-11.3.0
ISA-L	Intelligent Storage Acceleration Library	2.30.0-GCCcore-11.3.0
jemalloc	jemalloc is a general purpose malloc(3) implementation that emphasizes fragmentation avoidance and scalable concurrency support.	5.2.1-GCCcore-11.2.0 5.3.0-GCCcore-11.3.0
libaio	Asynchronous input/output library that uses the kernels native interface.	0.3.112-GCCcore-11.3.0
libdap	A C++ SDK which contains an implementation of DAP 2.0 and DAP4.0. This includes both Client- and Server-side support classes.	3.20.11-GCCcore-11.3.0
libdrm	Direct Rendering Manager runtime library.	2.4.102-GCCcore-10.2.0 2.4.107-GCCcore-11.2.0 2.4.110-GCCcore-11.3.0
libepoxy	Epoxy is a library for handling OpenGL function pointer management for you	1.5.10-GCCcore-11.3.0 1.5.8-GCCcore-11.2.0
libev	A full-featured and high-performance (see benchmark) event loop that is loosely modelled after libevent, but without its limitations and bugs. It is used in GNU Virtual Private Ethernet, rxvt-unicode, auditd, the Deliantra MORPG Server and Client, and many other programs.	4.33-GCC-11.2.0 4.33-GCC-11.3.0
libevent	The libevent API provides a mechanism to execute a callback function when a specific event occurs on a file descriptor or after a timeout has been reached. Furthermore, libevent also support callbacks due to signals or regular timeouts.	2.1.11-GCCcore-9.3.0 2.1.12-GCCcore-10.2.0 2.1.12-GCCcore-10.3.0 2.1.12-GCCcore-11.2.0 2.1.12-GCCcore-11.3.0 2.1.12-GCCcore-12.2.0
libfabric	Libfabric is a core component of OFI. It is the library that defines and exports the user-space API of OFI, and is typically the only software that applications deal with directly. It works in conjunction with provider libraries, which are often integrated directly into libfabric.	1.11.0-GCCcore-10.2.0 1.11.0-GCCcore-9.3.0 1.12.1-GCCcore-10.3.0 1.13.2-GCCcore-11.2.0 1.15.1-GCCcore-11.3.0 1.16.1-GCCcore-12.2.0
libffi	The libffi library provides a portable, high level programming interface to various calling conventions. This allows a programmer to call any function specified by a call interface description at run-time.	3.3-GCCcore-10.2.0 3.3-GCCcore-10.3.0 3.3-GCCcore-9.3.0 3.4.2-GCCcore-11.2.0 3.4.2-GCCcore-11.3.0 3.4.4-GCCcore-12.2.0 3.4.4-GCCcore-12.3.0
libgd	GD is an open source code library for the dynamic creation of images by programmers.	2.3.3-GCCcore-11.3.0
libgeotiff	Library for reading and writing coordinate system information from/to GeoTIFF files	1.7.0-GCCcore-11.2.0 1.7.1-GCCcore-11.3.0
libglvnd	libglvnd is a vendor-neutral dispatch layer for arbitrating OpenGL API calls between multiple vendors.	1.3.2-GCCcore-10.2.0 1.3.3-GCCcore-11.2.0 1.4.0-GCCcore-11.3.0
libiconv	Libiconv converts from one character encoding to another through Unicode conversion	1.16-GCCcore-10.2.0 1.16-GCCcore-10.3.0 1.16-GCCcore-11.2.0 1.16-GCCcore-9.3.0 1.17-GCCcore-11.3.0
libidn	GNU Libidn is a fully documented implementation of the Stringprep, Punycode and IDNA specifications. Libidn's purpose is to encode and decode internationalized domain names.	1.38-GCCcore-11.2.0 1.41-GCCcore-11.3.0
libidn2	Libidn2 implements the revised algorithm for internationalized domain names called IDNA2008/TR46.	2.3.2-GCCcore-11.2.0 2.3.2-GCCcore-11.3.0
libjpeg-turbo	libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding.	2.0.5-GCCcore-10.2.0 2.0.6-GCCcore-10.3.0 2.0.6-GCCcore-11.2.0 2.1.3-GCCcore-11.3.0
libogg	Ogg is a multimedia container format, and the native file and stream format for the Xiph.org multimedia codecs.	1.3.5-GCCcore-11.3.0
libopus	Opus is a totally open, royalty-free, highly versatile audio codec. Opus is unmatched for interactive speech and music transmission over the Internet, but is also intended for storage and streaming applications. It is standardized by the Internet Engineering Task Force (IETF) as RFC 6716 which incorporated technology from Skype’s SILK codec and Xiph.Org’s CELT codec.	1.3.1-GCCcore-11.3.0
libpng	libpng is the official PNG reference library	1.6.37-GCCcore-10.2.0 1.6.37-GCCcore-10.3.0 1.6.37-GCCcore-11.2.0 1.6.37-GCCcore-11.3.0 1.6.37-GCCcore-8.3.0 1.6.37-GCCcore-9.3.0
libpsl	C library for the Public Suffix List	0.21.1-GCCcore-11.2.0 0.21.1-GCCcore-11.3.0
libreadline	The GNU Readline library provides a set of functions for use by applications that allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. The Readline library includes additional functions to maintain a list of previously-entered command lines, to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.	8.0-GCCcore-10.2.0 8.0-GCCcore-8.3.0 8.0-GCCcore-9.3.0 8.1.2-GCCcore-11.3.0 8.1-GCCcore-10.3.0 8.1-GCCcore-11.2.0 8.2-GCCcore-12.2.0 8.2-GCCcore-12.3.0
librttopo	The RT Topology Library exposes an API to create and manage standard (ISO 13249 aka SQL/MM) topologies using user-provided data stores.	1.1.0-GCC-11.2.0
libsndfile	Libsndfile is a C library for reading and writing files containing sampled sound (such as MS Windows WAV and the Apple/SGI AIFF format) through one standard library interface.	1.1.0-GCCcore-11.3.0
libsodium	Sodium is a modern, easy-to-use software library for encryption, decryption, signatures, password hashing and more.	1.0.18-GCCcore-11.3.0
LibSoup	libsoup is an HTTP client/server library for GNOME. It uses GObjects and the glib main loop, to integrate well with GNOME applications, and also has a synchronous API, for use in threaded applications.	3.0.7-GCC-11.2.0 3.0.8-GCC-11.3.0
libspatialindex	C++ implementation of R*-tree, an MVR-tree and a TPR-tree with C API	1.9.3-GCCcore-11.2.0
libspatialite	SpatiaLite is an open source library intended to extend the SQLite core to support fully fledged Spatial SQL capabilities.	5.0.1-GCC-11.2.0
libtasn1	Libtasn1 is the ASN.1 library used by GnuTLS, GNU Shishi and some other packages. It was written by Fabio Fiorina, and has been shipped as part of GnuTLS for some time but is now a proper GNU package.	4.18.0-GCCcore-11.2.0 4.19.0-GCCcore-11.3.0
LibTIFF	tiff: Library and tools for reading and writing TIFF data files	4.3.0-GCCcore-11.2.0 4.3.0-GCCcore-11.3.0
libtirpc	Libtirpc is a port of Suns Transport-Independent RPC library to Linux.	1.3.2-GCCcore-11.2.0 1.3.2-GCCcore-11.3.0
libtool	GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface.	2.4.6-GCCcore-10.2.0 2.4.6-GCCcore-10.3.0 2.4.6-GCCcore-11.2.0 2.4.6-GCCcore-9.3.0 2.4.7-GCCcore-11.3.0 2.4.7-GCCcore-12.2.0 2.4.7-GCCcore-12.3.0
libunistring	This library provides functions for manipulating Unicode strings and for manipulating C strings according to the Unicode standard.	1.0-GCCcore-11.2.0 1.0-GCCcore-11.3.0
libunwind	The primary goal of libunwind is to define a portable and efficient C programming interface (API) to determine the call-chain of a program. The API additionally provides the means to manipulate the preserved (callee-saved) state of each call-frame and to resume execution at any point in the call-chain (non-local goto). The API supports both local (same-process) and remote (across-process) operation. As such, the API is useful in a number of applications	1.4.0-GCCcore-10.2.0 1.4.0-GCCcore-10.3.0 1.5.0-GCCcore-11.2.0 1.6.2-GCCcore-11.3.0
libvorbis	Ogg Vorbis is a fully open, non-proprietary, patent-and-royalty-free, general-purpose compressed audio format	1.3.7-GCCcore-11.3.0
libvori	C++ library implementing the Voronoi integration as well as the compressed bqb file format. The present version of libvori is a very early development version, which is hard-coded to work with the CP2k program package.	220621-GCCcore-12.2.0
libwebp	WebP is a modern image format that provides superior lossless and lossy compression for images on the web. Using WebP, webmasters and web developers can create smaller, richer images that make the web faster.	1.2.0-GCCcore-11.2.0
libwpe	WPE is the reference WebKit port for embedded and low-consumption computer devices. It has been designed from the ground-up with performance, small footprint, accelerated content rendering, and simplicity of deployment in mind, bringing the excellence of the WebKit engine to countless platforms and target devices.	1.13.3-GCCcore-11.2.0
libxml2	Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable outside of the Gnome platform).	2.10.3-GCCcore-12.2.0 2.11.4-GCCcore-12.3.0 2.9.10-GCCcore-10.2.0 2.9.10-GCCcore-10.3.0 2.9.10-GCCcore-11.2.0 2.9.10-GCCcore-9.3.0 2.9.13-GCCcore-11.3.0
libxslt	Libxslt is the XSLT C library developed for the GNOME project (but usable outside of the Gnome platform).	1.1.34-GCCcore-11.2.0 1.1.34-GCCcore-11.3.0
libyaml	LibYAML is a YAML parser and emitter written in C.	0.2.5-GCCcore-11.2.0 0.2.5-GCCcore-11.3.0
libzip	libzip is a C library for reading, creating, and modifying zip archives.	1.7.3-GCCcore-11.2.0
lxml	The lxml XML toolkit is a Pythonic binding for the C libraries libxml2 and libxslt.	4.6.3-GCCcore-11.2.0 4.9.1-GCCcore-11.3.0
lz4	LZ4 is lossless compression algorithm, providing compression speed at 400 MB/s per core. It features an extremely fast decoder, with speed in multiple GB/s per core.	1.9.2-GCCcore-10.2.0 1.9.3-GCCcore-10.3.0 1.9.3-GCCcore-11.2.0 1.9.3-GCCcore-11.3.0 1.9.4-GCCcore-12.2.0
minizip	Mini zip and unzip based on zlib	1.1-GCCcore-11.2.0
NCCL	The NVIDIA Collective Communications Library (NCCL) implements multi-GPU and multi-node collective communication primitives that are performance optimized for NVIDIA GPUs.	2.10.3-GCCcore-11.2.0-CUDA-11.4.1 2.12.12-GCCcore-11.3.0-CUDA-11.7.0
nettle	Nettle is a cryptographic library that is designed to fit easily in more or less any context: In crypto toolkits for object-oriented languages (C++, Python, Pike, ...), in applications like LSH or GNUPG, or even in kernel space.	3.7.2-GCCcore-10.3.0 3.7.3-GCCcore-11.2.0 3.8-GCCcore-11.3.0
nghttp2	This is an implementation of the Hypertext Transfer Protocol version 2 in C. The framing layer of HTTP/2 is implemented as a reusable C library. On top of that, we have implemented an HTTP/2 client, server and proxy. We have also developed load test and benchmarking tools for HTTP/2. An HPACK encoder and decoder are available as a public API.	1.48.0-GCC-11.2.0 1.48.0-GCC-11.3.0
nghttp3	nghttp3 is an implementation of RFC 9114 HTTP/3 mapping over QUIC and RFC 9204 QPACK in C. It does not depend on any particular QUIC transport implementation.	0.6.0-GCCcore-11.2.0 0.6.0-GCCcore-11.3.0
ngtcp2	'Call it TCP/2. One More Time.' ngtcp2 project is an effort to implement RFC9000 QUIC protocol.	0.7.0-GCC-11.2.0 0.7.0-GCC-11.3.0
nlohmann_json	JSON for Modern C++	3.10.5-GCCcore-11.3.0
NSPR	Netscape Portable Runtime (NSPR) provides a platform-neutral API for system level and libc-like functions.	4.29-GCCcore-10.2.0 4.32-GCCcore-11.2.0 4.34-GCCcore-11.3.0
NSS	Network Security Services (NSS) is a set of libraries designed to support cross-platform development of security-enabled client and server applications.	3.57-GCCcore-10.2.0 3.69-GCCcore-11.2.0 3.79-GCCcore-11.3.0
OpenJPEG	OpenJPEG is an open-source JPEG 2000 codec written in C language. It has been developed in order to promote the use of JPEG 2000, a still-image compression standard from the Joint Photographic Experts Group (JPEG). Since may 2015, it is officially recognized by ISO/IEC and ITU-T as a JPEG 2000 Reference Software.	2.4.0-GCCcore-11.2.0
p11-kit	Provides a way to load and enumerate PKCS#11 modules. Provides a standard configuration setup for installing PKCS#11 modules in such a way that they're discoverable. Also solves problems with coordinating the use of PKCS#11 by different components or libraries living in the same process.	0.24.1-GCCcore-11.2.0 0.24.1-GCCcore-11.3.0
PMIx	Process Management for Exascale Environments PMI Exascale (PMIx) represents an attempt to provide an extended version of the PMI standard specifically designed to support clusters up to and including exascale sizes. The overall objective of the project is not to branch the existing pseudo-standard definitions - in fact, PMIx fully supports both of the existing PMI-1 and PMI-2 APIs - but rather to (a) augment and extend those APIs to eliminate some current restrictions that impact scalability, and (b) provide a reference implementation of the PMI-server that demonstrates the desired level of scalability.	3.1.5-GCCcore-10.2.0 3.1.5-GCCcore-9.3.0 3.2.3-GCCcore-10.3.0 4.1.0-GCCcore-11.2.0 4.1.2-GCCcore-11.3.0 4.2.2-GCCcore-12.2.0
PROJ	Program proj is a standard Unix filter function which converts geographic longitude and latitude coordinates into cartesian coordinates	8.1.0-GCCcore-11.2.0 9.0.0-GCCcore-11.3.0
psycopg2	Psycopg is the most popular PostgreSQL adapter for the Python programming language.	2.9.5-GCCcore-11.2.0
pybind11	pybind11 is a lightweight header-only library that exposes C++ types in Python and vice versa, mainly to create Python bindings of existing C++ code.	2.10.3-GCCcore-12.2.0 2.4.3-GCCcore-9.3.0-Python-3.8.2 2.6.0-GCCcore-10.2.0 2.6.2-GCCcore-10.3.0 2.7.1-GCCcore-11.2.0 2.9.2-GCCcore-11.3.0
python-isal	Faster zlib and gzip compatible compression and decompression by providing python bindings for the isa-l library.	1.1.0-GCCcore-11.3.0
PyYAML	PyYAML is a YAML parser and emitter for the Python programming language.	5.4.1-GCCcore-11.2.0 6.0-GCCcore-11.3.0
Qwt	The Qwt library contains GUI Components and utility classes which are primarily useful for programs with a technical background.	6.2.0-GCCcore-11.2.0
scikit-build	Scikit-Build, or skbuild, is an improved build system generator for CPython C/C++/Fortran/Cython extensions.	0.11.1-GCCcore-11.2.0
SDL2	SDL: Simple DirectMedia Layer, a cross-platform multimedia library	2.0.20-GCCcore-11.2.0 2.0.22-GCCcore-11.3.0
snappy	Snappy is a compression/decompression library. It does not aim for maximum compression, or compatibility with any other compression library; instead, it aims for very high speeds and reasonable compression.	1.1.8-GCCcore-10.2.0 1.1.9-GCCcore-11.2.0 1.1.9-GCCcore-11.3.0
tbb	Intel(R) Threading Building Blocks (Intel(R) TBB) lets you easily write parallel C++ programs that take full advantage of multicore performance, that are portable, composable and have future-proof scalability.	2020.3-GCCcore-10.3.0
UCC	UCC (Unified Collective Communication) is a collective communication operations API and library that is flexible, complete, and feature-rich for current and emerging programming models and runtimes.	1.0.0-GCCcore-11.3.0 1.1.0-GCCcore-12.2.0
UCC-CUDA	UCC (Unified Collective Communication) is a collective communication operations API and library that is flexible, complete, and feature-rich for current and emerging programming models and runtimes. This module adds the UCC CUDA support.	1.0.0-GCCcore-11.3.0-CUDA-11.7.0
UCX	Unified Communication X An open-source production grade communication framework for data centric and high-performance applications	1.10.0-GCCcore-10.3.0 1.11.2-GCCcore-11.2.0 1.12.1-GCCcore-11.3.0 1.13.1-GCCcore-12.2.0 1.14.1-GCCcore-12.3.0 1.8.0-GCCcore-9.3.0 1.9.0-GCCcore-10.2.0
UCX-CUDA	Unified Communication X An open-source production grade communication framework for data centric and high-performance applications This module adds the UCX CUDA support.	1.11.2-GCCcore-11.2.0-CUDA-11.4.1 1.12.1-GCCcore-11.3.0-CUDA-11.7.0
Waylandpp	Wayland is an object oriented display protocol, which features request and events. Requests can be seen as method calls on certain objects, whereas events can be seen as signals of an object. This makes the Wayland protocol a perfect candidate for a C++ binding. The goal of this library is to create such a C++ binding for Wayland using the most modern C++ technology currently available, providing an easy to use C++ API to Wayland.	1.0.0-GCCcore-11.2.0
WebKitGTK+	WebKitGTK+ is a full-featured port of the WebKit rendering engine, suitable for projects requiring any kind of web integration, from hybrid HTML/CSS applications to full-fledged web browsers. It offers WebKit's full functionality and is useful in a wide range of systems from desktop computers to embedded systems like phones, tablets, and televisions.	2.37.1-GCC-11.2.0
wpebackend-fdo	WPE WebKit allows embedders to create simple and performant systems based on Web platform technologies. It is a WebKit port designed with flexibility and hardware acceleration in mind, leveraging common 3D graphics APIs for best performance.	1.13.1-GCCcore-11.2.0
zlib	zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system.	1.2.11-GCCcore-10.2.0 1.2.11-GCCcore-10.3.0 1.2.11-GCCcore-11.2.0 1.2.11-GCCcore-8.3.0 1.2.11-GCCcore-9.3.0 1.2.11 1.2.12-GCCcore-11.3.0 1.2.12-GCCcore-12.2.0 1.2.12 1.2.13-GCCcore-12.3.0 1.2.13 1.2.8-GCCcore-5.4.0 1.2.8
zstd	Zstandard is a real-time compression algorithm, providing high compression ratios. It offers a very wide range of compression/speed trade-off, while being backed by a very fast decoder. It also offers a special mode for small data, called dictionary compression, and can create dictionaries from any sample set.	1.4.5-GCCcore-10.2.0 1.4.9-GCCcore-10.3.0 1.5.0-GCCcore-11.2.0 1.5.2-GCCcore-11.3.0 1.5.2-GCCcore-12.2.0

math

Module	Description	Versions
Eigen	Eigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers, and related algorithms.	3.3.7-GCCcore-9.3.0 3.3.8-GCCcore-10.2.0 3.3.9-GCCcore-10.3.0 3.3.9-GCCcore-11.2.0 3.4.0-GCCcore-11.2.0 3.4.0-GCCcore-11.3.0 3.4.0-GCCcore-12.2.0
ELPA	Eigenvalue SoLvers for Petaflop-Applications.	2021.11.001-intel-2022a 2022.05.001-foss-2022a-CUDA-11.7.0
GEOS	GEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS)	3.10.3-GCC-11.3.0 3.9.1-GCC-11.2.0
GMP	GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbers.	6.2.0-GCCcore-10.2.0 6.2.0-GCCcore-9.3.0 6.2.1-GCCcore-10.3.0 6.2.1-GCCcore-11.2.0 6.2.1-GCCcore-11.3.0 6.2.1-GCCcore-12.2.0 6.2.1-GCCcore-12.3.0
KaHIP	The graph partitioning framework KaHIP -- Karlsruhe High Quality Partitioning.	3.14-gompi-2022a
libcerf	libcerf is a self-contained numeric library that provides an efficient and accurate implementation of complex error functions, along with Dawson, Faddeeva, and Voigt functions.	2.1-GCCcore-11.3.0
libxsmm	LIBXSMM is a library for small dense and small sparse matrix-matrix multiplications targeting Intel Architecture (x86).	1.17-GCC-11.3.0 1.17-GCC-12.2.0
METIS	METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes.	5.1.0-GCCcore-11.3.0
MPFR	The MPFR library is a C library for multiple-precision floating-point computations with correct rounding.	4.1.0-GCCcore-11.3.0
Qhull	Qhull computes the convex hull, Delaunay triangulation, Voronoi diagram, halfspace intersection about a point, furthest-site Delaunay triangulation, and furthest-site Voronoi diagram. The source code runs in 2-d, 3-d, 4-d, and higher dimensions. Qhull implements the Quickhull algorithm for computing the convex hull.	2020.2-GCCcore-11.2.0 2020.2-GCCcore-11.3.0
ScaFaCoS	ScaFaCoS is a library of scalable fast coulomb solvers.	1.0.1-foss-2021a 1.0.1-foss-2021b
SCOTCH	Software package and libraries for sequential and parallel graph partitioning, static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.	7.0.1-gompi-2022a
Shapely	Shapely is a BSD-licensed Python package for manipulation and analysis of planar geometric objects. It is based on the widely deployed GEOS (the engine of PostGIS) and JTS (from which GEOS is ported) libraries.	1.8.2-foss-2021b
Voro++	Voro++ is a software library for carrying out three-dimensional computations of the Voronoi tessellation. A distinguishing feature of the Voro++ library is that it carries out cell-based calculations, computing the Voronoi cell for each particle individually. It is particularly well-suited for applications that rely on cell-based statistics, where features of Voronoi cells (eg. volume, centroid, number of faces) can be used to analyze a system of particles.	0.4.6-GCCcore-10.3.0 0.4.6-GCCcore-11.2.0

mpi

Module	Description	Versions
impi	Intel MPI Library, compatible with MPICH ABI	2021.6.0-intel-compilers-2022.1.0 2021.7.1-intel-compilers-2022.2.1 2021.9.0-intel-compilers-2023.1.0
OpenMPI	The Open MPI Project is an open source MPI-3 implementation.	4.0.3-GCC-9.3.0 4.0.5-GCC-10.2.0 4.1.1-GCC-10.3.0 4.1.1-GCC-11.2.0 4.1.1-intel-compilers-2021.2.0 4.1.1-intel-compilers-2021.4.0 4.1.4-GCC-11.3.0 4.1.4-GCC-12.2.0 4.1.4-NVHPC-22.7-CUDA-11.7.0

numlib

Module	Description	Versions
BLIS	BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries.	0.8.1-GCC-10.3.0 0.8.1-GCC-11.2.0 0.9.0-GCC-11.3.0 0.9.0-GCC-12.2.0
CGAL	The goal of the CGAL Open Source Project is to provide easy access to efficient and reliable geometric algorithms in the form of a C++ library.	4.14.3-gompi-2022a
cuDNN	The NVIDIA CUDA Deep Neural Network library (cuDNN) is a GPU-accelerated library of primitives for deep neural networks.	8.8.0.121-CUDA-12.0.0
FFTW	FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.	3.3.10-GCC-11.3.0 3.3.10-GCC-12.2.0 3.3.10-gompi-2021b 3.3.8-gompi-2020a 3.3.8-gompi-2020b 3.3.9-gompi-2021a
FFTW.MPI	FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.	3.3.10-gompi-2022.05 3.3.10-gompi-2022a 3.3.10-gompi-2022b
GSL	The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting.	2.7-GCC-10.3.0 2.7-GCC-11.2.0 2.7-GCC-11.3.0 2.7-GCC-12.2.0
imkl	Intel oneAPI Math Kernel Library	2021.4.0-iompi-2021b 2022.1.0 2022.2.1 2023.1.0
imkl-FFTW	FFTW interfaces using Intel oneAPI Math Kernel Library	2022.1.0-iimpi-2022a 2022.2.1-iimpi-2022b 2023.1.0-iimpi-2023a
NLopt	NLopt is a free/open-source library for nonlinear optimization, providing a common interface for a number of different free optimization routines available online as well as original implementations of various other algorithms.	2.7.1-GCCcore-11.3.0
OpenBLAS	OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.	0.3.12-GCC-10.2.0 0.3.15-GCC-10.3.0 0.3.18-GCC-11.2.0 0.3.20-GCC-11.3.0 0.3.21-GCC-12.2.0 0.3.9-GCC-9.3.0
ScaLAPACK	The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers.	2.1.0-gompi-2020a 2.1.0-gompi-2020b 2.1.0-gompi-2021a-fb 2.1.0-gompi-2021b-fb 2.2.0-gompi-2022.05-fb 2.2.0-gompi-2022a-fb 2.2.0-gompi-2022b-fb

perf

Module	Description	Versions
PAPI	PAPI provides the tool designer and application engineer with a consistent interface and methodology for use of the performance counter hardware found in most major microprocessors. PAPI enables software engineers to see, in near real time, the relation between software performance and processor events. In addition Component PAPI provides access to a collection of components that expose performance measurement opportunites across the hardware and software stack.	7.0.0-GCCcore-11.3.0

phys

Module	Description	Versions
UDUNITS	UDUNITS supports conversion of unit specifications between formatted and binary forms, arithmetic manipulation of units, and conversion of values between compatible scales of measurement.	2.2.28-GCCcore-11.3.0

system

Module	Description	Versions
CUDA	CUDA (formerly Compute Unified Device Architecture) is a parallel computing platform and programming model created by NVIDIA and implemented by the graphics processing units (GPUs) that they produce. CUDA gives developers access to the virtual instruction set and memory of the parallel computational elements in CUDA GPUs.	11.3.1 11.4.1 11.7.0 11.8.0 12.0.0 12.1.1
file	The file command is 'a file type guesser', that is, a command-line tool that tells you in words what kind of data a file contains.	5.43-GCCcore-11.3.0
GnuTLS	GnuTLS is a secure communications library implementing the SSL, TLS and DTLS protocols and technologies around them. It provides a simple C language application programming interface (API) to access the secure communications protocols as well as APIs to parse and write X.509, PKCS #12, OpenPGP and other required structures. It is aimed to be portable and efficient with focus on security and interoperability.	3.7.3-GCCcore-11.2.0 3.7.8-GCCcore-11.3.0
hwloc	The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficiently.	2.2.0-GCCcore-10.2.0 2.2.0-GCCcore-9.3.0 2.4.1-GCCcore-10.3.0 2.5.0-GCCcore-11.2.0 2.7.1-GCCcore-11.3.0 2.8.0-GCCcore-12.2.0 2.9.1-GCCcore-12.3.0
libdeflate	Heavily optimized library for DEFLATE/zlib/gzip compression and decompression.	1.10-GCCcore-11.3.0
libgcrypt	Libgcrypt is a general purpose cryptographic library originally based on code from GnuPG	1.9.3-GCCcore-11.2.0
libgpg-error	Libgpg-error is a small library that defines common error values for all GnuPG components.	1.42-GCCcore-11.2.0
libpciaccess	Generic PCI access library.	0.16-GCCcore-10.2.0 0.16-GCCcore-10.3.0 0.16-GCCcore-11.2.0 0.16-GCCcore-11.3.0 0.16-GCCcore-9.3.0 0.17-GCCcore-12.2.0 0.17-GCCcore-12.3.0
OpenPGM	OpenPGM is an open source implementation of the Pragmatic General Multicast (PGM) specification in RFC 3208 available at www.ietf.org. PGM is a reliable and scalable multicast protocol that enables receivers to detect loss, request retransmission of lost data, or notify an application of unrecoverable loss. PGM is a receiver-reliable protocol, which means the receiver is responsible for ensuring all data is received, absolving the sender of reception responsibility.	5.2.122-GCCcore-11.3.0
OpenSSL	The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) protocols as well as a full-strength general purpose cryptography library.	1.1

toolchain

Module	Description	Versions
foss	GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.	2020a 2020b 2021a 2021b 2022.05 2022a 2022b
gfbf	GNU Compiler Collection (GCC) based compiler toolchain, including FlexiBLAS (BLAS and LAPACK support) and (serial) FFTW.	2022b
gompi	GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support.	2020a 2020b 2021a 2021b 2022.05 2022a 2022b
iimpi	Intel C/C++ and Fortran compilers, alongside Intel MPI.	2022a 2022b 2023a
intel	Compiler toolchain including Intel compilers, Intel MPI and Intel Math Kernel Library (MKL).	2022a 2022b 2023a
iomkl	Compiler toolchain including Intel compilers, Open MPI and Intel Math Kernel Library (MKL).	2021b
iompi	Intel C/C++ and Fortran compilers, alongside Open MPI.	2021a 2021b

tools

Module	Description	Versions
ANTLR	ANTLR, ANother Tool for Language Recognition, (formerly PCCTS) is a language tool that provides a framework for constructing recognizers, compilers, and translators from grammatical descriptions containing Java, C#, C++, or Python actions.	2.7.7-GCCcore-11.3.0-Java-11
archspec	A library for detecting, labeling, and reasoning about microarchitectures	0.1.2-GCCcore-10.3.0 0.1.3-GCCcore-11.2.0
binutils	binutils: GNU binary utilities	2.26-GCCcore-5.4.0 2.26 2.32-GCCcore-8.3.0 2.32 2.34-GCCcore-9.3.0 2.34 2.35-GCCcore-10.2.0 2.35 2.36.1-GCCcore-10.3.0 2.36.1 2.37-GCCcore-11.2.0 2.37 2.38-GCCcore-11.3.0 2.38-GCCcore-12.2.0 2.38 2.39-GCCcore-12.2.0 2.39 2.40-GCCcore-12.3.0 2.40
bzip2	bzip2 is a freely available, patent free, high-quality data compressor. It typically compresses files to within 100 150f the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.	1.0.8-GCCcore-10.2.0 1.0.8-GCCcore-10.3.0 1.0.8-GCCcore-11.2.0 1.0.8-GCCcore-11.3.0 1.0.8-GCCcore-12.2.0 1.0.8-GCCcore-12.3.0 1.0.8-GCCcore-8.3.0 1.0.8-GCCcore-9.3.0
ccache	Ccache (or “ccache”) is a compiler cache. It speeds up recompilation by caching previous compilations and detecting when the same compilation is being done again	4.6.1-GCCcore-11.2.0
configurable-http-proxy	HTTP proxy for node.js including a REST API for updating the routing table. Developed as a part of the Jupyter Hub multi-user server.	4.5.3-GCCcore-11.3.0
cppy	A small C++ header library which makes it easier to write Python extension modules. The primary feature is a PyObject smart pointer which automatically handles reference counting and provides convenience methods for performing common object operations.	1.1.0-GCCcore-11.2.0 1.2.1-GCCcore-11.3.0
cURL	libcurl is a free and easy-to-use client-side URL transfer library, supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling and more.	7.66.0-GCCcore-8.3.0 7.69.1-GCCcore-9.3.0 7.72.0-GCCcore-10.2.0 7.76.0-GCCcore-10.3.0 7.78.0-GCCcore-11.2.0 7.83.0-GCCcore-11.3.0 7.86.0-GCCcore-12.2.0 8.0.1-GCCcore-12.3.0
DB	Berkeley DB enables the development of custom data management solutions, without the overhead traditionally associated with such custom projects.	18.1.32-GCCcore-9.3.0 18.1.40-GCCcore-10.2.0 18.1.40-GCCcore-10.3.0 18.1.40-GCCcore-11.2.0 18.1.40-GCCcore-11.3.0 18.1.40-GCCcore-12.2.0
EasyBuild	EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.	4.7.0 4.7.1 4.7.2 4.8.1
enchant-2	Enchant aims to provide a simple but comprehensive abstraction for dealing with different spell checking libraries in a consistent way. A client, such as a text editor or word processor, need not know anything about a specific spell-checker, and since all back-ends are plugins, new spell-checkers can be added without needing any change to the program using Enchant.	2.3.3-GCCcore-11.2.0
exiv2	Exiv2 is a Cross-platform C++ library and a command line utility to manage image metadata.	0.27.5-GCCcore-11.2.0
expat	Expat is an XML parser library written in C. It is a stream-oriented parser in which an application registers handlers for things the parser might find in the XML document (like start tags).	2.2.9-GCCcore-10.2.0 2.2.9-GCCcore-10.3.0 2.2.9-GCCcore-9.3.0 2.4.1-GCCcore-11.2.0 2.4.8-GCCcore-11.3.0 2.4.9-GCCcore-12.2.0
fio	Flexible I/O tester	3.32-GCCcore-11.3.0 3.32-GCCcore-12.2.0
gettext	GNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we may build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools and documentation	0.20.1-GCCcore-9.3.0 0.20.1 0.21.1-GCCcore-12.2.0 0.21.1 0.21-GCCcore-10.2.0 0.21-GCCcore-10.3.0 0.21-GCCcore-11.2.0 0.21-GCCcore-11.3.0 0.21
Ghostscript	Ghostscript is a versatile processor for PostScript data with the ability to render PostScript to different targets. It used to be part of the cups printing stack, but is no longer used for that.	9.56.1-GCCcore-11.3.0
git	Git is a free and open source distributed version control system designed to handle everything from small to very large projects with speed and efficiency.	2.23.0-GCCcore-9.3.0-nodocs 2.28.0-GCCcore-10.2.0-nodocs 2.32.0-GCCcore-10.3.0-nodocs 2.33.1-GCCcore-11.2.0-nodocs 2.36.0-GCCcore-11.3.0-nodocs 2.38.1-GCCcore-12.2.0-nodocs
GLPK	The GLPK (GNU Linear Programming Kit) package is intended for solving large-scale linear programming (LP), mixed integer programming (MIP), and other related problems. It is a set of routines written in ANSI C and organized in the form of a callable library.	5.0-GCCcore-11.3.0
googletest	Google's framework for writing C++ tests on a variety of platforms	1.11.0-GCCcore-11.3.0
groff	Groff (GNU troff) is a typesetting system that reads plain text mixed with formatting commands and produces formatted output.	1.22.4-GCCcore-10.2.0 1.22.4-GCCcore-10.3.0 1.22.4-GCCcore-11.2.0 1.22.4-GCCcore-11.3.0 1.22.4-GCCcore-12.2.0 1.22.4-GCCcore-9.3.0
gzip	gzip (GNU zip) is a popular data compression program as a replacement for compress	1.10-GCCcore-10.2.0 1.10-GCCcore-10.3.0 1.10-GCCcore-11.2.0 1.12-GCCcore-11.3.0 1.12-GCCcore-12.2.0
help2man	help2man produces simple manual pages from the '--help' and '--version' output of other commands.	1.47.12-GCCcore-9.3.0 1.47.16-GCCcore-10.2.0 1.47.8-GCCcore-8.3.0 1.48.3-GCCcore-10.3.0 1.48.3-GCCcore-11.2.0 1.49.2-GCCcore-11.3.0 1.49.2-GCCcore-12.2.0 1.49.3-GCCcore-12.3.0
hiredis	Hiredis is a minimalistic C client library for the Redis database. It is minimalistic because it just adds minimal support for the protocol, but at the same time it uses a high level printf-alike API in order to make it much higher level than otherwise suggested by its minimal code base and the lack of explicit bindings for every Redis command.	1.0.2-GCCcore-11.2.0
hunspell	Hunspell is a spell checker and morphological analyzer library and program designed for languageswith rich morphology and complex word compounding or character encoding.	1.7.1-GCCcore-11.2.0
hypothesis	Hypothesis is an advanced testing library for Python. It lets you write tests which are parametrized by a source of examples, and then generates simple and comprehensible examples that make your tests fail. This lets you find more bugs in your code with less work.	5.41.2-GCCcore-10.2.0 6.13.1-GCCcore-10.3.0 6.14.6-GCCcore-11.2.0 6.46.7-GCCcore-11.3.0 6.68.2-GCCcore-12.2.0
IPython	IPython provides a rich architecture for interactive computing with: Powerful interactive shells (terminal and Qt-based). A browser-based notebook with support for code, text, mathematical expressions, inline plots and other rich media. Support for interactive data visualization and use of GUI toolkits. Flexible, embeddable interpreters to load into your own projects. Easy to use, high performance tools for parallel computing.	8.5.0-GCCcore-11.3.0
JupyterHub	JupyterHub is a multiuser version of the Jupyter (IPython) notebook designed for centralized deployments in companies, university classrooms and research labs.	3.0.0-GCCcore-11.3.0
jupyter-server	The Jupyter Server provides the backend (i.e. the core services, APIs, and REST endpoints) for Jupyter web applications like Jupyter notebook, JupyterLab, and Voila.	1.21.0-GCCcore-11.3.0
jupyter-server-proxy	Jupyter Server Proxy lets you run arbitrary external processes (such as RStudio, Shiny Server, Syncthing, PostgreSQL, Code Server, etc) alongside your notebook server and provide authenticated web access to them using a path like /rstudio next to others like /lab. Alongside the python package that provides the main functionality, the JupyterLab extension (@jupyterlab/server-proxy) provides buttons in the JupyterLab launcher window to get to RStudio for example.	3.2.2-GCCcore-11.3.0
libarchive	Multi-format archive and compression library	3.4.3-GCCcore-10.2.0 3.5.1-GCCcore-10.3.0 3.5.1-GCCcore-11.2.0 3.6.1-GCCcore-11.3.0 3.6.1-GCCcore-12.2.0 3.6.2-GCCcore-12.3.0
Meson	Meson is a cross-platform build system designed to be both as fast and as user friendly as possible.	0.55.1-GCCcore-9.3.0-Python-3.8.2 0.55.3-GCCcore-10.2.0 0.58.0-GCCcore-10.3.0 0.58.2-GCCcore-11.2.0 0.62.1-GCCcore-11.3.0 0.64.0-GCCcore-12.2.0
NCO	The NCO toolkit manipulates and analyzes data stored in netCDF-accessible formats, including DAP, HDF4, and HDF5.	5.1.3-foss-2022a
networkx	NetworkX is a Python package for the creation, manipulation, and study of the structure, dynamics, and functions of complex networks.	2.6.3-foss-2021b 2.8.4-foss-2022a
Ninja	Ninja is a small build system with a focus on speed.	1.10.0-GCCcore-9.3.0 1.10.1-GCCcore-10.2.0 1.10.2-GCCcore-10.3.0 1.10.2-GCCcore-11.2.0 1.10.2-GCCcore-11.3.0 1.11.1-GCCcore-12.2.0
nmon	Nmon is short for Nigel's performance Monitor. The nmon command displays and records local system information. The command can run either in interactive or recording mode. If you specify any of the -F, -f, -X, -x, and -Z flags, the nmon command is in recording mode. Otherwise, the nmon command is in interactive mode.	16p
numactl	The numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.	2.0.13-GCCcore-10.2.0 2.0.13-GCCcore-9.3.0 2.0.14-GCCcore-10.3.0 2.0.14-GCCcore-11.2.0 2.0.14-GCCcore-11.3.0 2.0.16-GCCcore-12.2.0 2.0.16-GCCcore-12.3.0
pigz	pigz, which stands for parallel implementation of gzip, is a fully functional replacement for gzip that exploits multiple processors and multiple cores to the hilt when compressing data. pigz was written by Mark Adler, and uses the zlib and pthread libraries.	2.7-GCCcore-11.3.0
PycURL	PycURL is a Python interface to libcurl. PycURL can be used to fetch objects identified by a URL from a Python program, similar to the urllib Python module. PycURL is mature, very fast, and supports a lot of features.	7.45.2-GCCcore-11.3.0
QtKeychain	Platform-independent Qt API for storing passwords securely.	0.13.2-GCCcore-11.2.0
re2c	re2c is a free and open-source lexer generator for C and C++. Its main goal is generating fast lexers: at least as fast as their reasonably optimized hand-coded counterparts. Instead of using traditional table-driven approach, re2c encodes the generated finite state automata directly in the form of conditional jumps and comparisons.	2.0.3-GCCcore-10.2.0 2.2-GCCcore-11.2.0 2.2-GCCcore-11.3.0
Szip	Szip compression software, providing lossless compression of scientific data	2.1.1-GCCcore-10.2.0 2.1.1-GCCcore-10.3.0 2.1.1-GCCcore-11.2.0 2.1.1-GCCcore-11.3.0
tcsh	Tcsh is an enhanced, but completely compatible version of the Berkeley UNIX C shell (csh). It is a command language interpreter usable both as an interactive login shell and a shell script command processor. It includes a command-line editor, programmable word completion, spelling correction, a history mechanism, job control and a C-like syntax.	6.22.04-GCCcore-10.3.0
tpcds-kit	tpcds-kit The official TPC-DS tools can be found at tpc.org. This version is based on v2.10.0 and has been modified to: Allow compilation under macOS (commit 2ec45c5) Address obvious query template bugs like query22a: #31 query77a: #43 Rename s_web_returns column wret_web_site_id to wret_web_page_id to match specification. See #22 & #42. To see all modifications, diff the files in the master branch to the version branch.	2.10.0
UnZip	UnZip is an extraction utility for archives compressed in .zip format (also called "zipfiles"). Although highly compatible both with PKWARE's PKZIP and PKUNZIP utilities for MS-DOS and with Info-ZIP's own Zip program, our primary objectives have been portability and non-MSDOS functionality.	6.0-GCCcore-10.2.0 6.0-GCCcore-10.3.0 6.0-GCCcore-11.2.0 6.0-GCCcore-11.3.0 6.0-GCCcore-12.2.0 6.0-GCCcore-12.3.0 6.0-GCCcore-9.3.0
util-linux	Set of Linux utilities	2.35-GCCcore-9.3.0 2.36-GCCcore-10.2.0 2.36-GCCcore-10.3.0 2.37-GCCcore-11.2.0 2.38-GCCcore-11.3.0
xxd	xxd is part of the VIM package and this will only install xxd, not vim! xxd converts to/from hexdumps of binary files.	8.2.4220-GCCcore-10.3.0 8.2.4220-GCCcore-11.2.0 8.2.4220-GCCcore-11.3.0 9.0.1696-GCCcore-12.2.0
XZ	xz: XZ utilities	5.2.5-GCCcore-10.2.0 5.2.5-GCCcore-10.3.0 5.2.5-GCCcore-11.2.0 5.2.5-GCCcore-11.3.0 5.2.5-GCCcore-9.3.0 5.2.7-GCCcore-12.2.0 5.4.2-GCCcore-12.3.0
yaml-cpp	yaml-cpp is a YAML parser and emitter in C++ matching the YAML 1.2 spec	0.7.0-GCCcore-11.3.0
Z3	Z3 is a theorem prover from Microsoft Research.	4.12.2-GCCcore-12.2.0 4.12.2-GCCcore-12.3.0

vis

Module	Description	Versions
ATK	ATK provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications.	2.36.0-GCCcore-11.2.0 2.38.0-GCCcore-11.3.0
at-spi2-atk	AT-SPI 2 toolkit bridge	2.38.0-GCCcore-11.2.0 2.38.0-GCCcore-11.3.0
at-spi2-core	Assistive Technology Service Provider Interface.	2.40.3-GCCcore-11.2.0 2.44.1-GCCcore-11.3.0
cairo	Cairo is a 2D graphics library with support for multiple output devices. Currently supported output targets include the X Window System (via both Xlib and XCB), Quartz, Win32, image buffers, PostScript, PDF, and SVG file output. Experimental backends include OpenGL, BeOS, OS/2, and DirectFB	1.16.0-GCCcore-11.2.0 1.17.4-GCCcore-11.3.0
FFmpeg	A complete, cross-platform solution to record, convert and stream audio and video.	4.3.2-GCCcore-10.3.0 4.3.2-GCCcore-11.2.0 4.4.2-GCCcore-11.3.0 5.0.1-GCCcore-11.3.0
FLTK	FLTK is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), Microsoft Windows, and MacOS X. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGL and its built-in GLUT emulation.	1.3.8-GCCcore-11.3.0
fontconfig	Fontconfig is a library designed to provide system-wide font configuration, customization and application access.	2.13.92-GCCcore-10.2.0 2.13.92-GCCcore-9.3.0 2.13.93-GCCcore-10.3.0 2.13.94-GCCcore-11.2.0 2.14.0-GCCcore-11.3.0
freetype	FreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display servers, font conversion tools, text image generation tools, and many other products as well.	2.10.1-GCCcore-8.3.0 2.10.1-GCCcore-9.3.0 2.10.3-GCCcore-10.2.0 2.10.4-GCCcore-10.3.0 2.11.0-GCCcore-11.2.0 2.12.1-GCCcore-11.3.0
Gdk-Pixbuf	The Gdk Pixbuf is a toolkit for image loading and pixel buffer manipulation. It is used by GTK+ 2 and GTK+ 3 to load and manipulate images. In the past it was distributed as part of GTK+ 2 but it was split off into a separate package in preparation for the change to GTK+ 3.	2.42.6-GCCcore-11.2.0 2.42.8-GCCcore-11.3.0
GLib	GLib is one of the base libraries of the GTK+ project	2.66.1-GCCcore-10.2.0 2.68.2-GCCcore-10.3.0 2.69.1-GCCcore-11.2.0 2.72.1-GCCcore-11.3.0
gnuplot	Portable interactive, function plotting utility	5.4.4-GCCcore-11.3.0
Graphviz	Graphviz is open source graph visualization software. Graph visualization is a way of representing structural information as diagrams of abstract graphs and networks. It has important applications in networking, bioinformatics, software engineering, database and web design, machine learning, and in visual interfaces for other technical domains.	5.0.0-GCCcore-11.3.0
GST-plugins-base	GStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing.	1.18.5-GCC-11.2.0
GStreamer	GStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing.	1.18.5-GCC-11.2.0
GTK2	The GTK+ 2 package contains libraries used for creating graphical user interfaces for applications.	2.24.33-GCCcore-11.3.0
GTK3	GTK+ is the primary library used to construct user interfaces in GNOME. It provides all the user interface controls, or widgets, used in a common graphical application. Its object-oriented API allows you to construct user interfaces without dealing with the low-level details of drawing and device interaction.	3.24.31-GCCcore-11.2.0 3.24.33-GCCcore-11.3.0
GTS	GTS stands for the GNU Triangulated Surface Library. It is an Open Source Free Software Library intended to provide a set of useful functions to deal with 3D surfaces meshed with interconnected triangles.	0.7.6-GCCcore-11.3.0
HarfBuzz	HarfBuzz is an OpenType text shaping engine.	2.8.2-GCCcore-11.2.0 4.2.1-GCCcore-11.3.0
ImageMagick	ImageMagick is a software suite to create, edit, compose, or convert bitmap images	7.1.0-37-GCCcore-11.3.0
JasPer	The JasPer Project is an open-source initiative to provide a free software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard.	2.0.24-GCCcore-10.2.0 2.0.33-GCCcore-11.2.0 2.0.33-GCCcore-11.3.0
jbigkit	JBIG-KIT is a software implementation of the JBIG1 data compression standard (ITU-T T.82), which was designed for bi-level image data, such as scanned documents.	2.1-GCCcore-11.2.0 2.1-GCCcore-11.3.0
libGLU	The OpenGL Utility Library (GLU) is a computer graphics library for OpenGL.	9.0.1-GCCcore-10.2.0 9.0.2-GCCcore-11.2.0 9.0.2-GCCcore-11.3.0
LittleCMS	Little CMS intends to be an OPEN SOURCE small-footprint color management engine, with special focus on accuracy and performance.	2.12-GCCcore-11.2.0 2.13.1-GCCcore-11.3.0
matplotlib	matplotlib is a python 2D plotting library which produces publication quality figures in a variety of hardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the python and ipython shell, web application servers, and six graphical user interface toolkits.	3.2.1-foss-2020a-Python-3.8.2 3.4.3-foss-2021b 3.5.2-foss-2022a
Mesa	Mesa is an open-source implementation of the OpenGL specification - a system for rendering interactive 3D graphics.	20.2.1-GCCcore-10.2.0 21.1.7-GCCcore-11.2.0 22.0.3-GCCcore-11.3.0
OpenEXR	OpenEXR is a high dynamic-range (HDR) image file format developed by Industrial Light & Magic for use in computer imaging applications	3.1.5-GCCcore-11.3.0
Pango	Pango is a library for laying out and rendering of text, with an emphasis on internationalization. Pango can be used anywhere that text layout is needed, though most of the work on Pango so far has been done in the context of the GTK+ widget toolkit. Pango forms the core of text and font handling for GTK+-2.x.	1.48.8-GCCcore-11.2.0 1.50.7-GCCcore-11.3.0
ParaView	ParaView is a scientific parallel visualizer.	5.10.1-foss-2022a-mpi
Pillow	Pillow is the 'friendly PIL fork' by Alex Clark and Contributors. PIL is the Python Imaging Library by Fredrik Lundh and Contributors.	8.3.2-GCCcore-11.2.0 9.1.1-GCCcore-11.3.0
pixman	Pixman is a low-level software library for pixel manipulation, providing features such as image compositing and trapezoid rasterization. Important users of pixman are the cairo graphics library and the X server.	0.40.0-GCCcore-10.3.0 0.40.0-GCCcore-11.2.0 0.40.0-GCCcore-11.3.0
POV-Ray	The Persistence of Vision Raytracer, or POV-Ray, is a ray tracing program which generates images from a text-based scene description, and is available for a variety of computer platforms. POV-Ray is a high-quality, Free Software tool for creating stunning three-dimensional graphics. The source code is available for those wanting to do their own ports.	3.7.0.10-GCC-11.3.0
PyMOL	PyMOL is a Python-enhanced molecular graphics tool. It excels at 3D visualization of proteins, small molecules, density, surfaces, and trajectories. It also includes molecular editing, ray tracing, and movies. Open Source PyMOL is free to everyone!	2.5.0-foss-2020b
PyQt5	PyQt5 is a set of Python bindings for v5 of the Qt application framework from The Qt Company. This bundle includes PyQtWebEngine, a set of Python bindings for The Qt Company’s Qt WebEngine framework.	5.15.1-GCCcore-10.2.0 5.15.4-GCCcore-11.2.0
QScintilla	QScintilla is a port to Qt of Neil Hodgson's Scintilla C++ editor control	2.11.6-GCCcore-11.2.0
Tk	Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building a graphical user interface (GUI) in many different programming languages.	8.6.10-GCCcore-10.2.0 8.6.10-GCCcore-9.3.0 8.6.11-GCCcore-11.2.0 8.6.12-GCCcore-11.3.0
VMD	VMD is a molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting.	1.9.4a57-foss-2022a
VTK	The Visualization Toolkit (VTK) is an open-source, freely available software system for 3D computer graphics, image processing and visualization. VTK consists of a C++ class library and several interpreted interface layers including Tcl/Tk, Java, and Python. VTK supports a wide variety of visualization algorithms including: scalar, vector, tensor, texture, and volumetric methods; and advanced modeling techniques such as: implicit modeling, polygon reduction, mesh smoothing, cutting, contouring, and Delaunay triangulation.	9.1.0-foss-2021b
Wayland	Wayland is a project to define a protocol for a compositor to talk to its clients as well as a library implementation of the protocol. The compositor can be a standalone display server running on Linux kernel modesetting and evdev input devices, an X application, or a wayland client itself. The clients can be traditional applications, X servers (rootless or fullscreen) or other display servers.	1.21.0-GCCcore-11.2.0
wxPython	Wraps the wxWidgets C++ toolkit and provides access to the user interface portions of the wxWidgets API, enabling Python applications to have a native GUI on Windows, Macs or Unix systems, with a native look and feel and requiring very little (if any) platform specific code.	4.2.0-foss-2021b
wxWidgets	wxWidgets is a C++ library that lets developers create applications for Windows, Mac OS X, Linux and other platforms with a single code base. It has popular language bindings for Python, Perl, Ruby and many other languages, and unlike other cross-platform toolkits, wxWidgets gives applications a truly native look and feel because it uses the platform's native API rather than emulating the GUI.	3.2.0-GCC-11.2.0
X11	The X Window System (X11) is a windowing system for bitmap displays	20200222-GCCcore-9.3.0 20201008-GCCcore-10.2.0 20210518-GCCcore-10.3.0 20210802-GCCcore-11.2.0 20220504-GCCcore-11.3.0
x264	x264 is a free software library and application for encoding video streams into the H.264/MPEG-4 AVC compression format, and is released under the terms of the GNU GPL.	20210414-GCCcore-10.3.0 20210613-GCCcore-11.2.0 20220620-GCCcore-11.3.0
x265	x265 is a free software library and application for encoding video streams into the H.265 AVC compression format, and is released under the terms of the GNU GPL.	3.5-GCCcore-10.3.0 3.5-GCCcore-11.2.0 3.5-GCCcore-11.3.0
xprop	The xprop utility is for displaying window and font properties in an X server. One window or font is selected using the command line arguments or possibly in the case of a window, by clicking on the desired window. A list of properties is then given, possibly with formatting information.	1.2.5-GCCcore-11.3.0
xtalopt	XtalOpt is a free and truly open source evolutionary algorithm designed for a priori crystal structure prediction.	12.1
Xvfb	Xvfb is an X server that can run on machines with no display hardware and no physical input devices. It emulates a dumb framebuffer using virtual memory.	21.1.3-GCCcore-11.3.0

Created by: Martin Blaško, marek.steklac